PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G162700.1.p
Common NameGLYMA_12G162700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 130aa    MW: 14427.2 Da    PI: 9.9024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G162700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-202570251
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                         +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa++
  Glyma.12G162700.1.p 25 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAAL 70
                         59*******.**********8...557*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-242584IPR001471AP2/ERF domain
PfamPF008472.3E-142570IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-262571IPR001471AP2/ERF domain
PROSITE profilePS5103220.5742570IPR001471AP2/ERF domain
CDDcd000181.28E-152557No hitNo description
SuperFamilySSF541717.19E-192571IPR016177DNA-binding domain
PRINTSPR003674.7E-122637IPR001471AP2/ERF domain
PRINTSPR003674.7E-124864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAPRDINRSN VVVAGGSNPT RKEIRYRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE  60
AARAYDAAAL ARPVVFFDAF ERAEVRASFD LPVAAFSDSD SSTVMDYERG SRRRVLDLDL  120
NVPPPPEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-162270251ATERF1
2gcc_A2e-162270251ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.327913e-99cotyledon| flower| hypocotyl| meristem| seed coat
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353743e-72AC235374.1 Glycine max strain Williams 82 clone GM_WBb0106J23, complete sequence.
GenBankAC2358343e-72AC235834.2 Glycine max clone GM_WBb0038B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527229.11e-59PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9FE674e-30ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A0R0HCT62e-87A0A0R0HCT6_SOYBN; Uncharacterized protein
STRINGGLYMA06G35710.14e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15712710
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-23erf domain protein 9